WebThe HiGlass viewer is a powerful tool for visualizing 1D and 2D genomic data and can be used integrated into other applications as well. Below is a list of other great tools that … Webhiglass-python Public. Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer. Python 26 MIT 9 12 3 Updated 3 weeks ago. clodius Public. Clodius is a …
Examples — HiGlass v1.0 documentation
WebAug 24, 2024 · HiGlass was built with an emphasis on usability. It provides an interface for continuous panning and zooming across genome-wide data. To facilitate comparison and … WebHiGlass only requests small chunks of data corresponding to the visible region from the server. As seen on the left, any higlass view is composed of a number of "tiles" which are pieced together to form the visible region on the screen. Tiles are identified by their zoom level, x position and y position (shown as z/x/y on in the figure). ... how far is bend from medford
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Webhiglass-python uses the recommended hatchling build-system, which is convenient to use via the hatch CLI. We recommend installing hatch globally (e.g., via pipx) and running the various commands defined within pyproject.toml. hatch will take care of creating and synchronizing a virtual environment with all dependencies defined in pyproject.toml. WebHiGlass uses a specialized track for displaying gene annotations. based on UCSC’s refGene files (e.g. http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/). For any identifiable genome assembly the following commands can be run to generate a list of gene annotation that can be loaded as a zoomable track in HiGlass. Prerequisites¶ WebGitHub - higlass/clodius: Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer. higlass / clodius Public develop 38 branches 79 tags Go to file Code nvictus Bump version: 0.19.0 → 0.20.0 dceb4bc 3 weeks ago 1,085 commits .github how far is bend from corvallis